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6.1.46 · Nucleic Acids and Protein Synthesis

The Structure of RNA — Cambridge AS & A Level Biology 9700 Revision Notes & Topical Questions

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6.1.4 The Structure of RNA — CAMBRIDGE AS & A LEVEL BIOLOGY 9700 — REVISION NOTES notes: Describe the structure of RNA, compare it with DNA, and outline the structure and functions of mRNA, tRNA and rRNA.

  • Polynucleotide
  • Reactivity
  • Short life
  • Efficiency
  • Amino acid binding site
  • Catalytic activity

Part 1 of 8General structure of RNA

General structure of RNA
Polynucleotide
  • Polynucleotide nucleotides contain ribose, a phosphate group and one of four bases: adenine, guanine, cytosine and uracil.
    • (replacing thymine)
Backbone
  • Backbone nucleotides join by phosphodiester bonds as in DNA.
Strands
  • RNA is usually single-stranded and much shorter than DNA,
  • but a strand can fold back on itself with complementary sections held by hydrogen bonds to give specific 3D shapes.
Origin
  • Origin it is made in the nucleus by transcription, with DNA as template and RNA polymerase, and most types move into the cytoplasm.

Part 2 of 8Comparing DNA and RNA

FeatureDNARNA
SugarDeoxyriboseRibose
BasesA, T, C, GA, U, C, G
StrandsTwo (double helix)Usually one
LengthVery long (millions of base pairs)Short (tens to thousands of bases)
StabilityVery stableLess stable, short-lived
LocationNucleus, mitochondria, chloroplastsNucleus, cytoplasm, ribosomes
FunctionStores genetic informationTransfers and uses information to make protein
  • Reactivity
    • the extra OH on carbon 2′ makes RNA more reactive and more easily hydrolysed, which suits a temporary copy of a gene.

Part 3 of 8Messenger RNA (mRNA)

Messenger RNA (mRNA)
Structure
  • Structure a single linear strand that is a copy of one gene, variable in length.
    • (in eukaryotes after introns are removed)
Function
  • Function it carries the genetic code from the DNA in the nucleus to the ribosomes, so DNA does not leave the nucleus.
Codons
  • Codons the sequence is read in groups of three bases, each coding for one amino acid.
Short life
  • Short life it is broken down rapidly after use, so the cell can control how much protein is made.
Efficiency
  • Efficiency several ribosomes can use one mRNA at once to make many copies of a polypeptide.

Part 4 of 8Transfer RNA (tRNA)

Transfer RNA (tRNA)
Structure
  • Structure a single strand of about 75 to 90 nucleotides folded by complementary base pairing into a clover-leaf, and further into an L-shape.
  • Hydrogen bonds between paired regions keep the shape.
Anticodon
  • Anticodon three bases on one loop complementary to a particular mRNA codon.
Amino acid binding site
  • Amino acid binding site at the 3′ end (always CCA), where a specific amino acid is attached by an aminoacyl tRNA synthetase using ATP.
Types
  • Types a different tRNA for each amino acid, at least 20 types in the cell.
Function
  • Function in translation, tRNA brings its amino acid to the ribosome,
    • where the anticodon pairs with the codon, placing amino acids in the correct order.

Part 5 of 8Ribosomal RNA (rRNA)

Abundance
  • Abundance it is the most abundant type of RNA.
Ribosome
  • Ribosome it combines with proteins to form the two subunits, and is made in the nucleolus in eukaryotes.
    • (eukaryotes 80S with 60S and 40S subunits; prokaryotes 70S)
Catalytic activity
  • Catalytic activity rRNA folds into complex shapes and forms the peptide bonds between amino acids in translation, so it is a ribozyme.
Binding sites
  • Binding sites the ribosome holds mRNA and tRNA in the correct positions.

Part 6 of 8The three types compared

TypeShapeLocationFunction
mRNALinear, variable lengthNucleus to cytoplasmCarries the code for a polypeptide
tRNAClover-leaf folded to an L-shape, with anticodonCytoplasmBrings a specific amino acid to the ribosome
rRNAGlobular, combined with proteinRibosomesForms the ribosome and forms peptide bonds

Part 7 of 8Roles of RNA in evolution and viruses

RNA world
  • RNA may have been the first genetic material, since it can store information in its base sequence and act as a catalyst.
    • (ribozymes such as rRNA)
Later change
  • DNA took over as the more stable store, and proteins as more versatile catalysts.
Viruses
  • Viruses in many viruses, including HIV, influenza and coronaviruses, RNA is the genetic material.
Reverse transcriptase
  • Reverse transcriptase some viruses use it to make DNA from RNA.

Part 8 of 8More from the specification

More from the specification
Nucleotide Subunits and Sugar-Phosphate Backbone
  • Both DNA and RNA nucleotides consist of a pentose sugar, a phosphate group,
    • (ribose in RNA, deoxyribose in DNA)
  • and a nitrogenous base joined covalently by phosphodiester bonds to form a sugar-phosphate backbone.
Purines vs. Pyrimidines and Complementary Base Pairing
  • Nitrogenous bases are classified as double-ring purines or single-ring pyrimidines (cytosine, thymine in DNA,
    • (adenine and guanine)
  • and uracil in RNA),
  • which pair specifically via hydrogen bonds.
    • (A=T/U with 2 bonds, C≡G with 3 bonds)
Antiparallel Double Helix Structure of DNA
  • A DNA molecule consists of two antiparallel polynucleotide strands running in opposite directions, twisted into a stable double helix.
    • (5' to 3' and 3' to 5')
Semi-Conservative Replication Mechanism
  • During semi-conservative DNA replication, DNA helicase unwinds the double helix and DNA polymerase synthesizes complementary daughter strands alongside each parental template strand.
Nucleotide Subunits and Sugar-Phosphate Backbone
  • Both DNA and RNA nucleotides consist of a pentose sugar, a phosphate group,
    • (ribose in RNA, deoxyribose in DNA)
  • and a nitrogenous base joined covalently by phosphodiester bonds to form a sugar-phosphate backbone.
Purines vs. Pyrimidines and Complementary Base Pairing
  • Nitrogenous bases are classified as double-ring purines or single-ring pyrimidines (cytosine, thymine in DNA,
    • (adenine and guanine)
  • and uracil in RNA),
  • which pair specifically via hydrogen bonds.
    • (A=T/U with 2 bonds, C≡G with 3 bonds)
Antiparallel Double Helix Structure of DNA
  • A DNA molecule consists of two antiparallel polynucleotide strands running in opposite directions, twisted into a stable double helix.
    • (5' to 3' and 3' to 5')
Semi-Conservative Replication Mechanism
  • During semi-conservative DNA replication, DNA helicase unwinds the double helix and DNA polymerase synthesizes complementary daughter strands alongside each parental template strand.
Replication
  • Exact copying of chromosomes before division.
Pentose
  • A monosaccharide with five carbon atoms.
Antiparallel
  • Running in opposite directions.
Semi-conservative
  • Each new DNA molecule has one old and one new strand.
Purine
  • A double-ring baseadenine or guanine.
Pyrimidine
  • A single-ring basecytosine, thymine or uracil.
Semi-conservative replication
  • Replication in which each new DNA molecule contains one original strand and one new strand.
Sugar-phosphate backbone
  • The continuous chain of alternating sugars and phosphates in a polynucleotide.

Key terms

TermMeaning
RNARibonucleic acid, a polynucleotide containing ribose and uracil.
mRNAMessenger RNA: carries the code for a polypeptide from DNA to ribosomes.
tRNATransfer RNA: carries a specific amino acid to the ribosome.
rRNARibosomal RNA: forms part of the ribosome.
CodonThree bases on mRNA coding for one amino acid.
AnticodonThree bases on tRNA complementary to a codon.
RibosePentose sugar in RNA.
TranscriptionMaking of an mRNA copy of a gene using DNA as a template.

Avoid these mistakes

1
Saying RNA never has base pairing — tRNA and rRNA have regions of complementary pairing.
2
Writing that mRNA contains thymine — it has uracil.
3
Confusing codon (on mRNA) with anticodon (on tRNA).
4
Saying tRNA is a straight chain — it is folded.

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