6.1.46 · Nucleic Acids and Protein Synthesis
The Structure of RNA — Cambridge AS & A Level Biology 9700 Revision Notes & Topical Questions
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Lesson summary
6.1.4 The Structure of RNA — CAMBRIDGE AS & A LEVEL BIOLOGY 9700 — REVISION NOTES notes: Describe the structure of RNA, compare it with DNA, and outline the structure and functions of mRNA, tRNA and rRNA.
- Polynucleotide
- Reactivity
- Short life
- Efficiency
- Amino acid binding site
- Catalytic activity
Part 1 of 8General structure of RNA
General structure of RNA
Polynucleotide
- Polynucleotide nucleotides contain ribose, a phosphate group and one of four bases: adenine, guanine, cytosine and uracil.
- (replacing thymine)
Backbone
- Backbone nucleotides join by phosphodiester bonds as in DNA.
Strands
- RNA is usually single-stranded and much shorter than DNA,
- but a strand can fold back on itself with complementary sections held by hydrogen bonds to give specific 3D shapes.
Origin
- Origin it is made in the nucleus by transcription, with DNA as template and RNA polymerase, and most types move into the cytoplasm.
Part 2 of 8Comparing DNA and RNA
| Feature | DNA | RNA |
|---|---|---|
| Sugar | Deoxyribose | Ribose |
| Bases | A, T, C, G | A, U, C, G |
| Strands | Two (double helix) | Usually one |
| Length | Very long (millions of base pairs) | Short (tens to thousands of bases) |
| Stability | Very stable | Less stable, short-lived |
| Location | Nucleus, mitochondria, chloroplasts | Nucleus, cytoplasm, ribosomes |
| Function | Stores genetic information | Transfers and uses information to make protein |
- Reactivity
- the extra OH on carbon 2′ makes RNA more reactive and more easily hydrolysed, which suits a temporary copy of a gene.
Part 3 of 8Messenger RNA (mRNA)
Messenger RNA (mRNA)
Structure
- Structure a single linear strand that is a copy of one gene, variable in length.
- (in eukaryotes after introns are removed)
Function
- Function it carries the genetic code from the DNA in the nucleus to the ribosomes, so DNA does not leave the nucleus.
Codons
- Codons the sequence is read in groups of three bases, each coding for one amino acid.
Short life
- Short life it is broken down rapidly after use, so the cell can control how much protein is made.
Efficiency
- Efficiency several ribosomes can use one mRNA at once to make many copies of a polypeptide.
Part 4 of 8Transfer RNA (tRNA)
Transfer RNA (tRNA)
Structure
- Structure a single strand of about 75 to 90 nucleotides folded by complementary base pairing into a clover-leaf, and further into an L-shape.
- Hydrogen bonds between paired regions keep the shape.
Anticodon
- Anticodon three bases on one loop complementary to a particular mRNA codon.
Amino acid binding site
- Amino acid binding site at the 3′ end (always CCA), where a specific amino acid is attached by an aminoacyl tRNA synthetase using ATP.
Types
- Types a different tRNA for each amino acid, at least 20 types in the cell.
Function
- Function in translation, tRNA brings its amino acid to the ribosome,
- where the anticodon pairs with the codon, placing amino acids in the correct order.
Part 5 of 8Ribosomal RNA (rRNA)
Abundance
- Abundance it is the most abundant type of RNA.
Ribosome
- Ribosome it combines with proteins to form the two subunits, and is made in the nucleolus in eukaryotes.
- (eukaryotes 80S with 60S and 40S subunits; prokaryotes 70S)
Catalytic activity
- Catalytic activity rRNA folds into complex shapes and forms the peptide bonds between amino acids in translation, so it is a ribozyme.
Binding sites
- Binding sites the ribosome holds mRNA and tRNA in the correct positions.
Part 6 of 8The three types compared
| Type | Shape | Location | Function |
|---|---|---|---|
| mRNA | Linear, variable length | Nucleus to cytoplasm | Carries the code for a polypeptide |
| tRNA | Clover-leaf folded to an L-shape, with anticodon | Cytoplasm | Brings a specific amino acid to the ribosome |
| rRNA | Globular, combined with protein | Ribosomes | Forms the ribosome and forms peptide bonds |
Part 7 of 8Roles of RNA in evolution and viruses
RNA world
- RNA may have been the first genetic material, since it can store information in its base sequence and act as a catalyst.
- (ribozymes such as rRNA)
Later change
- DNA took over as the more stable store, and proteins as more versatile catalysts.
Viruses
- Viruses in many viruses, including HIV, influenza and coronaviruses, RNA is the genetic material.
Reverse transcriptase
- Reverse transcriptase some viruses use it to make DNA from RNA.
Part 8 of 8More from the specification
More from the specification
Nucleotide Subunits and Sugar-Phosphate Backbone
- Both DNA and RNA nucleotides consist of a pentose sugar, a phosphate group,
- (ribose in RNA, deoxyribose in DNA)
- and a nitrogenous base joined covalently by phosphodiester bonds to form a sugar-phosphate backbone.
Purines vs. Pyrimidines and Complementary Base Pairing
- Nitrogenous bases are classified as double-ring purines or single-ring pyrimidines (cytosine, thymine in DNA,
- (adenine and guanine)
- and uracil in RNA),
- which pair specifically via hydrogen bonds.
- (A=T/U with 2 bonds, C≡G with 3 bonds)
Antiparallel Double Helix Structure of DNA
- A DNA molecule consists of two antiparallel polynucleotide strands running in opposite directions, twisted into a stable double helix.
- (5' to 3' and 3' to 5')
Semi-Conservative Replication Mechanism
- During semi-conservative DNA replication, DNA helicase unwinds the double helix and DNA polymerase synthesizes complementary daughter strands alongside each parental template strand.
Nucleotide Subunits and Sugar-Phosphate Backbone
- Both DNA and RNA nucleotides consist of a pentose sugar, a phosphate group,
- (ribose in RNA, deoxyribose in DNA)
- and a nitrogenous base joined covalently by phosphodiester bonds to form a sugar-phosphate backbone.
Purines vs. Pyrimidines and Complementary Base Pairing
- Nitrogenous bases are classified as double-ring purines or single-ring pyrimidines (cytosine, thymine in DNA,
- (adenine and guanine)
- and uracil in RNA),
- which pair specifically via hydrogen bonds.
- (A=T/U with 2 bonds, C≡G with 3 bonds)
Antiparallel Double Helix Structure of DNA
- A DNA molecule consists of two antiparallel polynucleotide strands running in opposite directions, twisted into a stable double helix.
- (5' to 3' and 3' to 5')
Semi-Conservative Replication Mechanism
- During semi-conservative DNA replication, DNA helicase unwinds the double helix and DNA polymerase synthesizes complementary daughter strands alongside each parental template strand.
Replication
- Exact copying of chromosomes before division.
Pentose
- A monosaccharide with five carbon atoms.
Antiparallel
- Running in opposite directions.
Semi-conservative
- Each new DNA molecule has one old and one new strand.
Purine
- A double-ring baseadenine or guanine.
Pyrimidine
- A single-ring basecytosine, thymine or uracil.
Semi-conservative replication
- Replication in which each new DNA molecule contains one original strand and one new strand.
Sugar-phosphate backbone
- The continuous chain of alternating sugars and phosphates in a polynucleotide.
Key terms
| Term | Meaning |
|---|---|
| RNA | Ribonucleic acid, a polynucleotide containing ribose and uracil. |
| mRNA | Messenger RNA: carries the code for a polypeptide from DNA to ribosomes. |
| tRNA | Transfer RNA: carries a specific amino acid to the ribosome. |
| rRNA | Ribosomal RNA: forms part of the ribosome. |
| Codon | Three bases on mRNA coding for one amino acid. |
| Anticodon | Three bases on tRNA complementary to a codon. |
| Ribose | Pentose sugar in RNA. |
| Transcription | Making of an mRNA copy of a gene using DNA as a template. |
Avoid these mistakes
1
Saying RNA never has base pairing — tRNA and rRNA have regions of complementary pairing.
2
Writing that mRNA contains thymine — it has uracil.
3
Confusing codon (on mRNA) with anticodon (on tRNA).
4
Saying tRNA is a straight chain — it is folded.
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