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3.4Topic 3 · Voice of the Genome

Differentiation and Variation — Edexcel A Level Biology A (SNAB) 9BI0 Revision Notes & Topical Questions

15 min read 22 parts Lesson 19 of 26 1 quiz

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Stem Cells, Differentiation and Gene Expression — EDEXCEL A LEVEL BIOLOGY A (SNAB) 9BI0 — REVISION NOTES notes: Describe types of stem cell, their uses and ethical issues, and explain differentiation as differential gene expression.A stem cell is an undifferentiated cell that can…

  • Totipotent
  • Pluripotent
  • Multipotent
  • Worked example 1
  • Worked example 2
  • Worked example 3

Section 1 of 22What stem cells are

A stem cell is an undifferentiated cell that can divide by mitosis an unlimited number of times.

Differentiation
Each new cell can either remain a stem cell or develop into a specialised cell such as a blood cell or a muscle cell, by differentiation.
This ability to differentiate into more specialised cell types is called potency, and stem cells can be:
Totipotent
Totipotent can differentiate into any cell type, including the cells of the placenta (e.g. the cells of an early embryo up to the 8-cell stage).
Pluripotent
Pluripotent can form almost all body cell types but not extra-embryonic tissue (embryonic stem cells).
Multipotent
Multipotent can form a limited range of cell types within a particular tissue, e.g. adult stem cells such as bone marrow stem cells that form the different blood cells.

Adult stem cells are found in tissues such as bone marrow (used to produce blood cell types) and the brain (neural and glial cells). Small numbers of these remain to produce cells for growth, cell replacement and tissue repair.

Section 2 of 22Stem cells in medicine

Because stem cells can differentiate, they are very valuable in research and treatment, as they can replace damaged tissues and cells.

Stem cells in medicine
A stem cell therapy already exists for leukaemia (cancer of the bone marrow), in which the patient's own bone marrow stem cells are killed and then replaced with a transplant of healthy stem cells that eventually replaces all the bone marrow cells.
Other therapies are being researched,
  • including replacing damaged nerve tissue to treat spinal cord injuries,
  • and replacing damaged heart tissue after heart attacks.
Stem cell therapy also includes introducing adult stem cells into damaged tissue to treat disease and injuries such as skin burns.

Section 3 of 22Evaluating the use of stem cells

The use of stem cells collected from embryos created by IVF is ethically questionable, because it destroys a viable embryo (one that could become a foetus if implanted in a uterus).

Evaluating the use of stem cells
Adult stem cells raise fewer ethical questions,
  • but unlike embryonic stem cells they cannot differentiate into all the specialised cell types, some of which may be needed to treat certain diseases.
Other points include the risk of tumour formation, tissue rejection and the cost.
Society must therefore use all available scientific knowledge to decide on the use of stem cells, especially embryonic ones, considering the arguments for and against.

Section 4 of 22Differentiation: differential gene expression

Stem cells become specialised through differential gene expression: only certain genes in the DNA of the stem cell are activated and expressed.

Differentiation: differential gene expression
Every nucleus in the cells of a multicellular organism contains the same genes, i.e. all cells have an identical genome,
  • but different cells express different genes.
The mRNA produced from the active genes is translated into specific proteins, and these proteins determine the structure and function of the cell.
For example, a red blood cell expresses the genes for haemoglobin, while a muscle cell expresses the genes for actin and myosin.

Section 5 of 22Worked examples

  1. Explain why adult stem cells are less useful than embryonic stem cells in treatment. [2]2 marks

  2. Explain how two cells with the same genome can have different structures. [3]3 marks

  3. Give one ethical objection to the use of embryonic stem cells. [1]1 mark

Section 6 of 22Transcription factors in eukaryotes

Differential gene expression is controlled in eukaryotes by transcription factors: proteins that control the transcription of genes by binding to a specific region of DNA, usually near the gene's promoter.

Activator
An activator binds to the DNA and stimulates transcription, helping RNA polymerase bind and begin making mRNA.
Repressor
A repressor inhibits transcription by blocking the binding of RNA polymerase or the activator.
Binding of a transcription factor depends on its shape being complementary to the target DNA sequence; hormones such as oestrogen act by binding to a receptor to form a complex that becomes a transcription factor.

Section 7 of 22Operons in prokaryotes

In prokaryotes gene expression is often controlled using operons.

Operon
An operon is a section of DNA that includes a group of structural genes (coding for enzymes needed for a pathway), a promoter (where RNA polymerase binds) and an operator (where a repressor binds), with a regulatory gene elsewhere coding for the repressor.
This helps bacteria avoid wasting energy and materials making enzymes they do not need.

The lac operon controls the use of lactose. The components in order are the regulatory gene (coding for the repressor protein), the promoter, the operator, and the structural genes lacZ (coding for lactase, beta-galactosidase), lacY (coding for lactose permease, which moves lactose into the cell) and lacA.

Lactose absent
Lactose absent the repressor binds to the operator, preventing RNA polymerase from transcribing the structural genes. No lactase is synthesised.
Lactose present
Lactose present lactose binds to the repressor and changes its shape so that it cannot bind to the operator.
  • RNA polymerase can bind to the promoter and transcribe the structural genes, and lactase and permease are made so that lactose can be used.
  • When the lactose is used up, the repressor binds again and transcription stops.

Section 8 of 22Environmental influence and epigenetics

An organism's internal or external environment can influence gene expression. The levels of regulatory proteins or transcription factors can change in response to stimuli such as light, and to chemicals including drugs and hormones. For example, enzymes are activated by ultraviolet radiation and increase expression of melanin-producing genes, so more melanin is made and the skin becomes pigmented (tanning).

Epigenetics is the study of heritable changes in gene function that do not involve changes in the DNA base sequence.

Environmental influence and epigenetics
DNA is coiled around histone proteins to make chromatin.
One method of epigenetic control is DNA methylation (adding methyl groups to DNA, often at cytosine bases),
  • which inactivates genes by preventing transcription factors and RNA polymerase from binding.
Histone modification is another mechanism and is described in the next lesson.

Section 9 of 22Worked examples

  1. Describe how a transcription factor controls gene expression. [3]3 marks

  2. Explain what happens to the lac operon when lactose is absent. [3]3 marks

  3. Explain the benefit of the lac operon to bacteria. [2]2 marks

Section 10 of 22Histone modification

The amino acid lysine has a positively charged R group, which forms ionic bonds with the negatively charged phosphate backbone of DNA.

Acetylation
This helps DNA coil tightly around the histone protein core to form chromatin. Acetylation (adding acetyl groups) to lysine residues removes the positive charge and so removes a bond between the histone and the DNA,
  • making the DNA less tightly wrapped.
Deacetylation
When the DNA is less tightly wrapped, RNA polymerase and transcription factors can bind more easily, so gene expression can occur. Deacetylation (removal of acetyl groups) returns lysine to its positively charged state,
  • which attracts DNA more strongly, inhibits transcription and again stops the gene being expressed.

Section 11 of 22Epigenetic inheritance and mutation

Evidence shows that modifications to the epigenome in one generation can be passed on to the next generation at the cellular or whole-organism level.

Epigenetic inheritance and mutation
Epigenetic changes differ from mutations: both lead to changes in gene expression,
  • but mutations change the genetic code itself by altering the nucleotide sequence,
  • whereas epigenetic changes affect only the way the code is read.
Epigenetic changes can also be reversible.
Because many diseases, including some cancers, involve abnormal methylation of genes, epigenetic therapies are an area of research.

Section 12 of 22Phenotypes and variation

The observable characteristics of an organism are its phenotype, and phenotypic variation is the difference in phenotypes between organisms of the same species.

Phenotypes and variation
In some cases it is explained by genetic factors: the different alleles an organism has at a single gene locus can determine the phenotype.
Diploid organisms inherit two alleles of each gene, and these can be the same or different.
For example, the F8 gene codes for blood-clotting protein Factor VIII; the alleles at the F8 locus dictate whether normal Factor VIII is made and whether the individual has haemophilia.

Section 13 of 22Environmental causes of variation

The environment can also affect the phenotype.

Chlorosis
Plants grown in the dark or without enough magnesium become yellow even though genetically they should be green; this is chlorosis,
  • which occurs because synthesis of chlorophyll slows or stops.
    • (magnesium is a component of chlorophyll)
Plants grown in the dark may develop long stems and small curled leaves (etiolation).
Many characteristics are influenced by both genes and the environment, such as height, which depends on genes but also on diet.

Exam questions may ask why variation due to genetics is inherited but variation due to the environment is not. Genetic variation directly affects the DNA of the gametes; variation caused by the environment does not.

Section 14 of 22Applying the ideas to exam data

When data show identical twins who become different over time, such as differing disease risk, epigenetic changes (methylation and histone modification) caused by different environments are a good explanation, because their DNA sequences are identical. When the question gives plants of the same genotype grown under different conditions, any difference in phenotype is environmental; when plants of different genotypes are grown in the same conditions, differences are genetic.

Section 15 of 22Worked examples

  1. Explain how acetylation of histones increases gene expression. [4]4 marks

  2. State one difference between a mutation and an epigenetic change. [1]1 mark

  3. Explain why plants grown in the dark are yellow. [2]2 marks

Section 16 of 22Qualitative and quantitative variation

Variation in the phenotypes of organisms can be due to qualitative or quantitative differences. Discontinuous variation involves qualitative differences: individuals fall into distinct categories with no intermediates, for example human blood groups (A, B, AB, O).

Continuous variation
It is usually controlled by one or a few genes with little or no influence from the environment, and is shown on a bar chart. Continuous variation involves quantitative differences: there is a range of values with no discrete categories, for example height, mass and skin colour.
It is shown on a histogram or line graph and typically gives a bell-shaped (normal distribution) curve.

Section 17 of 22Polygenic inheritance

Some phenotypes are affected by many genes (polygenic inheritance), each with multiple alleles at different loci, as well as by the environment. This often gives rise to continuous variation, because the many combinations of alleles give many different phenotypes.

Where the alleles are additive, each dominant (or contributing) allele adds the same amount to the phenotype.

1
Example: two genes, H and T, each controlling height, where each upper-case allele adds x cm.
2
The genotype H H T T has four contributing alleles,
  • so the phenotype is x + x + x + x = 4x cm; the genotype h h t t has none and gives the smallest value.
3
Intermediate genotypes such as HhTt give 2x cm.
4
Crossing two heterozygotes gives a range of phenotypes in a ratio like a bell curve rather than 3 : 1.

Be careful

  • it is not a given that each gene has the same effect on the phenotype as in the example.
  • Check the information in the question.

Section 18 of 22Comparison

FeatureDiscontinuousContinuous
Type of differenceQualitative, distinct categoriesQuantitative, a range
GenesOne or few genesMany genes (polygenic) plus environment
ExampleBlood groupHeight
GraphBar chartHistogram / bell curve

Section 19 of 22Describing and explaining distributions

Continuous data in a sample of a population usually give a normal distribution: a symmetrical bell-shaped curve in which most individuals are near the mean and few are at the extremes.

Describing and explaining distributions
The mean and standard deviation describe it, and about 95% of values lie within two standard deviations of the mean.
A larger standard deviation means a wider spread of values.
When asked to explain why a characteristic shows a bell-shaped curve, state that many genes contribute (polygenic) and that the environment also affects the phenotype,
  • so that many intermediate phenotypes arise.

Example of an additive model with three genes: if each upper-case allele adds 2 cm, the genotype AABBCC adds 12 cm, AaBbCc adds 6 cm and aabbcc adds 0 cm, so there are seven phenotype classes, which form a bell-shaped distribution when plotted.

Section 20 of 22Worked examples

  1. Explain why human height shows continuous variation. [3]3 marks

  2. Two genes each have alleles that add 3 cm. What is the phenotypic contribution of the genotype AaBb? [2]2 marks

  3. Name the type of variation shown by blood groups. [1]1 mark

Section 21 of 22Key terms

TermMeaning
Stem cellUndifferentiated cell that divides repeatedly and can differentiate.
TotipotentAble to become any cell type including extra-embryonic.
PluripotentAble to become almost any body cell type.
MultipotentAble to become a limited range of cell types.
DifferentiationProcess by which a cell becomes specialised.
Differential gene expressionActivation of only some genes in a cell.
TermMeaning
Transcription factorProtein that binds to DNA to control transcription.
OperonGroup of genes under a single promoter and operator in prokaryotes.
RepressorProtein that prevents transcription.
OperatorDNA region to which a repressor binds.
EpigeneticsHeritable changes in gene expression without a change in DNA sequence.
DNA methylationAddition of methyl groups to DNA that inactivates genes.
TermMeaning
HistoneProtein around which DNA is wound.
AcetylationAddition of acetyl groups to histones, increasing expression.
ChlorosisYellowing of plants due to lack of chlorophyll.
Phenotypic variationDifferences in observable characteristics within a species.
TermMeaning
Continuous variationRange of phenotype values with no distinct categories.
Discontinuous variationDistinct phenotype categories.
PolygenicControlled by many genes.
Additive effectEach contributing allele adds to the phenotype.

Section 22 of 22Exam technique

Avoid these mistakes
Saying differentiated cells lose genes — they keep the whole genome but express only some of it.
Mixing up totipotent (all cell types) and multipotent (a few).
Saying adult stem cells are always from adults — the term means tissue stem cells.
Avoid these mistakes
Saying lactose binds to the operator — it binds to the repressor.
Saying the repressor gene is switched off by lactose — the repressor protein is changed.
Saying epigenetics changes the base sequence — it does not.
Avoid these mistakes
Saying acetylation makes DNA bind more tightly — it loosens binding.
Saying all variation is inherited.
Thinking epigenetic changes alter the nucleotide sequence.
Avoid these mistakes
Saying continuous variation is all environmental — it also has a genetic basis.
Plotting continuous data as a bar chart.
Assuming all alleles contribute equally in polygenic problems.

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