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1.5Unit 1: Lifestyle, Transport, Genes and Health

SNAB Nucleic Acids — IAL Edexcel Modular Revision Notes & Topical Questions

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1.5 Nucleic Acids — IAL EDEXCEL MODULAR notes: Describe the structure of nucleotides, DNA and RNA and the bonds that hold them together.Nucleotide = the monomer of DNA and RNA, made of a pentose sugar, a nitrogenous base and a phosphate group.DNA nucleotide — it contains deoxyrib…

  • RNA nucleotide
  • 2′ hydroxyl group
  • Pairing rule
  • Polynucleotide
  • Phosphodiester bond
  • Sugar-phosphate backbone

Section 1 of 10Nucleotide structure

Nucleotide structure
Nucleotide
Nucleotide the monomer of DNA and RNA, made of a pentose sugar, a nitrogenous base and a phosphate group.
DNA nucleotide
  • DNA nucleotide it contains deoxyribose, which has hydrogen at the 2′ position.
  • The base is adenine (A), cytosine (C), guanine (G) or thymine (T).
RNA nucleotide
  • RNA nucleotide it contains ribose, which has a hydroxyl group at the 2′ position.
  • The base is adenine, cytosine, guanine or uracil (U), and RNA never contains thymine.
2′ hydroxyl group
  • 2′ hydroxyl group it makes RNA more susceptible to hydrolysis, so DNA is the storage molecule and RNA is a shorter-lived transport molecule.

Section 2 of 10Purines and pyrimidines

TypeStructureBases
PurineDouble ringAdenine, guanine
PyrimidineSingle ringCytosine, thymine, uracil
  • Pairing rule
    • a purine always pairs with a pyrimidine, which keeps the width of the helix constant.

Section 3 of 10The phosphodiester bond

Polynucleotide
Polynucleotide a polymer of many nucleotides joined in a long chain.
Phosphodiester bond
Phosphodiester bond covalent bond formed by condensation between the phosphate group of one nucleotide and the pentose sugar of the next.
  • It is made of a phosphate group and two ester bonds.
  • It links the 3′ carbon of one sugar to the phosphate attached to the 5′ carbon of the next nucleotide.
Sugar-phosphate backbone
  • Sugar-phosphate backbone the chain of alternating phosphate groups and pentose sugars formed by many phosphodiester bonds.
Bases
  • Bases they project out from the backbone.

Section 4 of 10DNA structure

DNA structure
Two strands
  • DNA is two polynucleotide strands lying side by side in opposite directions, so they are antiparallel.
  • One strand runs 5′ to 3′ and the other 3′ to 5′, with a 5′ end and a 3′ end on each strand.
Backbone
  • Backbone each strand has alternating deoxyribose and phosphate joined by phosphodiester bonds.
Complementary base pairing
  • Complementary base pairing hydrogen bonds join the bases of the two strands.
  • Adenine pairs with thymine by two hydrogen bonds.
  • Guanine pairs with cytosine by three hydrogen bonds.
  • The amounts of A and T are equal, and the amounts of C and G are equal.
Double helix
  • Double helix the two strands twist to form a three-dimensional helix.
Bond locations
  • Bond locations phosphodiester bonds hold nucleotides in a strand and hydrogen bonds hold the two strands together.

Section 5 of 10RNA structure

RNA structure
Single strand
  • RNA is one polynucleotide strand, relatively short compared with DNA.
Sugar and base
  • Sugar and base it contains ribose and uracil in place of deoxyribose and thymine.
Backbone
  • Backbone alternating ribose and phosphate are joined by phosphodiester bonds between the 5′ and 3′ carbons, with bases projecting sideways.
TypeRole
mRNATranscript copy of a gene that codes for a specific polypeptide
tRNACarries amino acids to the ribosome
rRNAForms part of ribosomes

Section 6 of 10DNA compared with RNA

FeatureDNARNA
Pentose sugarDeoxyriboseRibose
BasesA, T, C, GA, U, C, G
StrandsTwo, antiparallel, in a double helixOne
LengthLongRelatively short
RoleStores genetic informationTransfers genetic information and builds proteins

Section 7 of 10More from the specification

More from the specification
Phosphodiester bond
  • Strong covalent bond formed between the 5'-phosphate group of one nucleotide and the 3'-hydroxyl group of the adjacent sugar in a polynucleotide chain.
Purines and Pyrimidines
  • Purines (adenine and guanine) possess a double-ring nitrogenous structure,
    • whereas pyrimidines have a single-ring structure.
      • (thymine, cytosine, uracil)
Semi-conservative replication
  • Mechanism where each newly synthesized double-stranded DNA molecule retains one intact parental template strand and one newly formed complementary strand.

Section 8 of 10More from the specification

More from the specification
Component
  • A part of a circuit.
Hydrogen bonding in DNA
  • Complementary nitrogenous base pairs are stabilized by specific hydrogen bonds, maintaining the stable double-helical architecture of DNA.

Section 9 of 10Key terms

TermMeaning
NucleotideMonomer of nucleic acids made of a pentose sugar, a base and a phosphate group.
Phosphodiester bondCovalent bond linking nucleotides, formed by condensation between phosphate and sugar.
AntiparallelRunning in opposite directions, as the two strands of DNA.
Complementary base pairingSpecific pairing of A with T (or U) and C with G.
PurineA base with a double ring structure, adenine or guanine.
PyrimidineA base with a single ring structure, cytosine, thymine or uracil.
PolynucleotideA polymer of many nucleotides.
Antiparallel strandsThe two polynucleotide chains in DNA run in opposite directions,(5' to 3' and 3' to 5')
Complementary base pairingPurines pair specifically with pyrimidines: adenine forms two hydrogen bonds with thymine, and cytosine forms three hydrogen bonds with guanine.(or uracil in RNA)
Phosphodiester linkStrong covalent bond linking the phosphate group at the 5' carbon of one pentose sugar to the 3' carbon of the neighbouring pentose sugar in the polynucleotide backbone.
Semi-conservative replicationThe process in which the double helix unwinds and each original template strand directs the synthesis of a complementary new strand, ensuring genetic continuity.

Section 10 of 10Exam technique

1
Saying RNA contains thymine — RNA has uracil instead.
2
Saying hydrogen bonds join nucleotides in a strand — phosphodiester bonds join them and hydrogen bonds join the two strands.
3
Pairing adenine with cytosine — adenine pairs with thymine (uracil in RNA) and guanine pairs with cytosine.
4
Saying purines pair with purines — a purine always pairs with a pyrimidine.

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