A3.1Theme A — Unity and diversity
Diversity of organisms — IB Biology SL Revision Notes & Topical Questions
10 min read 13 parts Lesson 9 of 11 2 quizzes
Curriculum Equation Key قوانين الرقم الهيدروجيني والاتزان الأيوني - pH & Acid-Base Equilibrium FormulasFast Exam Solution
pH = -log[H⁺] | pOH = -log[OH⁻] | pH + pOH = 14 | [H⁺][OH⁻] = 10⁻¹⁴
Word Equation & Conditions: الرقم الهيدروجيني = -لوغاريتم تركيز أيون الهيدروجين | pH + pOH = 14
Location & Specifications: الاتزان الأيوني، كيمياء 3 ثانوي، التحصيلي، و AP Chemistry.
Lesson summary
A3.1 Diversity of organisms — IB BIOLOGY SL notes: Describe variation, species concepts, chromosome number, karyograms and genomes, and the uses of genome sequencing.Variation = differences between organisms in appearance, behaviour or biochemistryAppearance includes fur colour o…
- Genetic causes
- Environmental causes
- Identical twins
- Continuous variation
- Binomial name
- Same genus
Section 1 of 13Variation and its causes
Variation
Variation differences between organisms in appearance, behaviour or biochemistry
- Appearance includes fur colour or body length.
- Behaviour includes courtship rituals and aggression.
- Biochemistry includes antibiotic resistance and metabolic products.
Genetic causes
- Genetic causes different alleles, produced by mutation and by the combination of alleles in sexual reproduction
Environmental causes
- Environmental causes temperature, nutrients, oxygen, diet and light affect gene expression, but the effects are not inherited
Identical twins
- Identical twins they have the same alleles but differ slightly because of the environment
No two individuals are identical, except clones
Continuous variation
- Continuous variation measured on a scale with no clear groups, such as height
- It is usually polygenic and influenced by the environment.
Discontinuous variation
- Discontinuous variation falls into distinct categories, such as black or brown fur or ABO blood group
Section 2 of 13Classification and the binomial system
Classification and the binomial system
Taxonomy
Taxonomy the science of classifying and naming organisms into groups called taxa
- The species is the smallest taxonomic group.
Linnaeus
- Linnaeus an 18th-century Swedish botanist, the father of taxonomy
- Before him names were long descriptions, such as the tomato's Solanum caule inermi herbaceo and so on.
- He introduced two-part Latin names, so the tomato became Solanum lycopersicum.
Binomial name
- Binomial name genus first, then species, in Latin
- The genus starts with a capital and the species with a lower-case letter, as in Apis mellifera.
- Type it in italics or underline it by hand.
- After the first full use the genus can be abbreviated, as in T. aestivum.
Same genus
- Same genus species in one genus share similar traits, such as Canis lupus, Canis latrans and Canis familiaris
Universal names
- Universal names scientists worldwide use the same name, avoiding confusion over local names
Limitation
- Limitation morphology alone misleads, as lookalikes may be distant relatives, so many Linnaean species were reclassified
Section 3 of 13Species concepts
Species concepts
Morphological species concept
Morphological species concept a species is a group of organisms that are morphologically unique
- It is quick but mimicry and variation can mislead.
Biological species concept
Biological species concept a species is a group of organisms that can interbreed to produce fertile offspring
Limitations of the biological concept
- Asexual organisms such as bacteria cannot be classified by interbreeding.
- Rare fertile hybrids, such as the wholphin, blur the line.
- Extinct species such as the woolly mammoth cannot be tested for interbreeding.
- Geographically isolated populations cannot meet, so interbreeding cannot be tested.
Other criteria
- DNA sequence similarity.
- Biochemistry, such as whether bacteria produce carbon dioxide or methane.
- Ecological niche.
- Evolutionary lineage from fossils.
Use together
- Use together scientists may use several concepts at once, and fossils need morphology or lineage
Section 4 of 13Populations and speciation
Speciation
Speciation the process by which one species gives rise to two or more new species
- Isolation stops gene flow between populations.
- Different selection pressures or genetic drift make the populations diverge.
- Reproductive isolation completes the split.
Gradual change
- Gradual change differences build up slowly, so no single moment marks a new species
- Deciding when two populations are separate species is partly subjective.
Orca example
- Orca example killer whales form several ecotypes, and experts disagree about whether there are several species
Congo River example
- Congo River example bonobos and chimpanzees were separated by the river
Section 5 of 13Chromosome number
Diploid cell
Diploid cell a cell with two complete sets of chromosomes (2n), usually body cells
Haploid cell
Haploid cell a cell with one set (n), usually the gametes
Fertilisation
- Fertilisation n + n gives a diploid zygote, so both gametes must have the same chromosome number
Rules for chromosome numbers
- Each individual of a species has the same number of chromosomes.
- The diploid number is always even.
- The number is not linked to how advanced a species is.
- Different numbers help prevent successful breeding between species.
- State whether the figure is for chromosomes, pairs or the haploid set.
| Organism | Diploid number | Gamete number | Note |
|---|---|---|---|
| Human | 46 | 23 | One pair fewer than the great apes |
| Chimpanzee | 48 | 24 | Two chromosomes fused in humans |
| Dog | 78 | 39 | Many small chromosomes |
| Rice | 24 | 12 | Crop plant |
| Fruit fly | 8 | 4 | Model organism |
| Horse threadworm | 4 | 2 | Very few chromosomes |
- Must know
- humans 46 and chimpanzees 48
Section 6 of 13Karyograms
Karyograms
Chromosome
- Chromosome a strand of DNA containing genes, which are seen as an X after replication
- The two arms are joined at the centromere.
- Metacentric chromosomes have the centromere near the middle and equal arms.
- Acrocentric chromosomes have it near one end and unequal arms.
Karyotype
Karyotype the appearance of a complete set of chromosomes, including number, size, shape and banding
Karyogram
Karyogram an image of the karyotype with chromosomes arranged in homologous pairs
- Pair 23 is often out of size order because it holds the sex chromosomes and X is large.
- Humans have XX for female and XY for male.
Uses
- Uses detecting trisomy, such as Down syndrome, and determining sex
1
Collect dividing cells.
2
Stop division at metaphase.
3
Stain the chromosomes and photograph them under the light microscope.
4
Cut out the photographs or use a computer to pair homologous chromosomes.
5
Arrange the pairs by decreasing size, shape and banding pattern.
Section 7 of 13Human chromosome 2 and testable hypotheses
Hypothesis
- Hypothesis chromosomes 12 and 13 of a common ancestor fused to form human chromosome 2
- Losing a whole pair would be harmful, so fusion is more likely.
Supporting evidence
- The combined length of chimp 12 and 13 matches human chromosome 2.
- The banding matches, and the chimp 12 centromere position matches.
- Satellite DNA marks the position of a lost second centromere.
- Telomeric DNA sits in the middle of the chromosome.
Evidence against
- The lengths overlap slightly rather than matching perfectly.
- The centromere position of chimp 13 does not match.
Wording
- Wording say humans and chimps share a common ancestor and never that humans came from chimps
Testable hypothesis
Testable hypothesis a statement that can be accepted or rejected using available evidence
- It is not testable if there is no evidence, such as the ancestor liking singing.
- Avoid vague words such as may or could, and do not phrase it as a prediction or a causal conclusion.
Section 8 of 13Genomes and sequence similarity
1Genome
Genome all of the genetic information of an organism
- It includes coding and non-coding DNA, mitochondrial and chloroplast DNA, and plasmids in prokaryotes.
2Similarity
- Similarity humans share about 99.9% of their DNA with each other and about 99% with chimpanzees
- Closely related individuals have more similar genomes.
3SNP
SNP a single nucleotide polymorphism, a one-base difference arising by mutation
- Most SNPs do not change the protein.
- They are used to trace ancestry and disease risk.
4Databases
- GenBank and NCBI hold DNA, RNA and protein sequences that can be compared between species
Section 9 of 13Genome size
| Organism | Type | Genome (million base pairs) | Comment |
|---|---|---|---|
| T2 phage | Virus of E. coli | 0.17 | Tiny viral genome |
| E. coli | Bacterium | 5 | Prokaryotes are small |
| Fruit fly | Insect | 140 | Compact animal genome |
| Human | Mammal | About 3100 | Smaller than hagfish (4200) |
| Common wheat | Polyploid crop | About 17 000 | Wild einkorn only about 5000 |
| Paris japonica | Flowering plant | About 150 000 | Among the largest known |
C-value
C-value the haploid nuclear DNA content, in picograms or megabases
- 1 pg = 10-12 g, which is about 978 Mb, and 1 Mb = 106 bases.
Size and complexity
- Size and complexity they are not linked
- The genome includes non-coding DNA.
- Polyploidy inflates plant genomes.
- Our view of complexity may be wrong.
Section 10 of 13Uses of genome sequencing
Methods
- Methods automated next-generation sequencing, becoming faster and cheaper each year
Phylogenetics
- Phylogenetics classifying species by evolutionary origin
- More similar DNA, mRNA or amino acid sequences mean a more recent common ancestor.
- Cytochrome c is often compared, and using several genes improves accuracy.
- Ancient DNA lets extinct species join phylogenetic trees.
Personalised medicine
- Human Genome Project data are used to design drugs that target specific proteins
- Targeted drugs can cause fewer side effects.
- Screening can find risk mutations, such as for breast cancer, allowing preventive surgery or lifestyle change.
- A genotype can predict how well a person responds to treatment.
Identification tools
- A dichotomous key uses yes or no choices about observable features.
- DNA barcoding compares a short gene sequence with a database.
- eDNA from water or soil detects rare or hidden species.
Section 11 of 13More from the specification
More from the specification
Biological species concept
- Organisms belonging to the same species can interbreed to produce fertile, viable offspring in nature.
Evolutionary relationships and cladistics
- Systematic biological classification groups organisms according to shared derived characteristics and common ancestry deduced from genome sequences.
Genome size variation
- Total amount of DNA measured in base pairs varies vastly across taxa without correlating directly to organismal complexity or chromosome count.
Surface area to volume ratio
- Morphological size constraints dictate metabolic exchange rates, influencing multicellular adaptation.
Classification
- Grouping organisms by shared features and relationships.
Section 12 of 13Key terms
| Term | Meaning |
|---|---|
| Variation | Differences in characteristics between individuals caused by genes, environment or both. |
| Biological species concept | A species is a group of organisms that can interbreed to produce fertile offspring. |
| Binomial nomenclature | The two-part Latin naming system of genus plus species devised by Linnaeus. |
| Karyogram | An image of an individual's chromosomes arranged in pairs by size, shape and banding. |
| Genome | All the genetic information of an organism. |
| SNP | A single nucleotide polymorphism, a one-base difference in DNA between individuals. |
| C-value | The haploid nuclear DNA content of an organism. |
| DNA barcoding | Identifying a species from a short standard DNA sequence. |
Section 13 of 13Exam technique
1
Saying morphology is enough to define a species — lookalike species may be distantly related
2
Saying humans evolved from chimpanzees — they share a common ancestor
3
Giving the haploid number as the diploid number — the diploid number is twice the haploid number and always even
4
Thinking a bigger genome means a more complex organism — genome size does not match complexity
Marked practiceQuizzes for this lesson
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