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A3.1Theme A — Unity and diversity

Diversity of organisms — IB Biology SL Revision Notes & Topical Questions

10 min read 13 parts Lesson 9 of 11 2 quizzes

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Curriculum Equation Key قوانين الرقم الهيدروجيني والاتزان الأيوني - pH & Acid-Base Equilibrium FormulasFast Exam Solution
pH = -log[H⁺] | pOH = -log[OH⁻] | pH + pOH = 14 | [H⁺][OH⁻] = 10⁻¹⁴
Word Equation & Conditions: الرقم الهيدروجيني = -لوغاريتم تركيز أيون الهيدروجين | pH + pOH = 14
Location & Specifications: الاتزان الأيوني، كيمياء 3 ثانوي، التحصيلي، و AP Chemistry.
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Lesson summary

A3.1 Diversity of organisms — IB BIOLOGY SL notes: Describe variation, species concepts, chromosome number, karyograms and genomes, and the uses of genome sequencing.Variation = differences between organisms in appearance, behaviour or biochemistryAppearance includes fur colour o…

  • Genetic causes
  • Environmental causes
  • Identical twins
  • Continuous variation
  • Binomial name
  • Same genus

Section 1 of 13Variation and its causes

Variation
Variation differences between organisms in appearance, behaviour or biochemistry
  • Appearance includes fur colour or body length.
  • Behaviour includes courtship rituals and aggression.
  • Biochemistry includes antibiotic resistance and metabolic products.
Genetic causes
  • Genetic causes different alleles, produced by mutation and by the combination of alleles in sexual reproduction
Environmental causes
  • Environmental causes temperature, nutrients, oxygen, diet and light affect gene expression, but the effects are not inherited
Identical twins
  • Identical twins they have the same alleles but differ slightly because of the environment
No two individuals are identical, except clones
Continuous variation
  • Continuous variation measured on a scale with no clear groups, such as height
  • It is usually polygenic and influenced by the environment.
Discontinuous variation
  • Discontinuous variation falls into distinct categories, such as black or brown fur or ABO blood group

Section 2 of 13Classification and the binomial system

Classification and the binomial system
Taxonomy
Taxonomy the science of classifying and naming organisms into groups called taxa
  • The species is the smallest taxonomic group.
Linnaeus
  • Linnaeus an 18th-century Swedish botanist, the father of taxonomy
  • Before him names were long descriptions, such as the tomato's Solanum caule inermi herbaceo and so on.
  • He introduced two-part Latin names, so the tomato became Solanum lycopersicum.
Binomial name
  • Binomial name genus first, then species, in Latin
  • The genus starts with a capital and the species with a lower-case letter, as in Apis mellifera.
  • Type it in italics or underline it by hand.
  • After the first full use the genus can be abbreviated, as in T. aestivum.
Same genus
  • Same genus species in one genus share similar traits, such as Canis lupus, Canis latrans and Canis familiaris
Universal names
  • Universal names scientists worldwide use the same name, avoiding confusion over local names
Limitation
  • Limitation morphology alone misleads, as lookalikes may be distant relatives, so many Linnaean species were reclassified

Section 3 of 13Species concepts

Species concepts
Morphological species concept
Morphological species concept a species is a group of organisms that are morphologically unique
  • It is quick but mimicry and variation can mislead.
Biological species concept
Biological species concept a species is a group of organisms that can interbreed to produce fertile offspring
Limitations of the biological concept
  • Asexual organisms such as bacteria cannot be classified by interbreeding.
  • Rare fertile hybrids, such as the wholphin, blur the line.
  • Extinct species such as the woolly mammoth cannot be tested for interbreeding.
  • Geographically isolated populations cannot meet, so interbreeding cannot be tested.
Other criteria
  • DNA sequence similarity.
  • Biochemistry, such as whether bacteria produce carbon dioxide or methane.
  • Ecological niche.
  • Evolutionary lineage from fossils.
Use together
  • Use together scientists may use several concepts at once, and fossils need morphology or lineage

Section 4 of 13Populations and speciation

Speciation
Speciation the process by which one species gives rise to two or more new species
  • Isolation stops gene flow between populations.
  • Different selection pressures or genetic drift make the populations diverge.
  • Reproductive isolation completes the split.
Gradual change
  • Gradual change differences build up slowly, so no single moment marks a new species
  • Deciding when two populations are separate species is partly subjective.
Orca example
  • Orca example killer whales form several ecotypes, and experts disagree about whether there are several species
Congo River example
  • Congo River example bonobos and chimpanzees were separated by the river

Section 5 of 13Chromosome number

Diploid cell
Diploid cell a cell with two complete sets of chromosomes (2n), usually body cells
Haploid cell
Haploid cell a cell with one set (n), usually the gametes
Fertilisation
  • Fertilisation n + n gives a diploid zygote, so both gametes must have the same chromosome number
Rules for chromosome numbers
  • Each individual of a species has the same number of chromosomes.
  • The diploid number is always even.
  • The number is not linked to how advanced a species is.
  • Different numbers help prevent successful breeding between species.
  • State whether the figure is for chromosomes, pairs or the haploid set.
OrganismDiploid numberGamete numberNote
Human4623One pair fewer than the great apes
Chimpanzee4824Two chromosomes fused in humans
Dog7839Many small chromosomes
Rice2412Crop plant
Fruit fly84Model organism
Horse threadworm42Very few chromosomes
  • Must know
    • humans 46 and chimpanzees 48

Section 6 of 13Karyograms

Karyograms
Chromosome
  • Chromosome a strand of DNA containing genes, which are seen as an X after replication
  • The two arms are joined at the centromere.
  • Metacentric chromosomes have the centromere near the middle and equal arms.
  • Acrocentric chromosomes have it near one end and unequal arms.
Karyotype
Karyotype the appearance of a complete set of chromosomes, including number, size, shape and banding
Karyogram
Karyogram an image of the karyotype with chromosomes arranged in homologous pairs
  • Pair 23 is often out of size order because it holds the sex chromosomes and X is large.
  • Humans have XX for female and XY for male.
Uses
  • Uses detecting trisomy, such as Down syndrome, and determining sex
1
Collect dividing cells.
2
Stop division at metaphase.
3
Stain the chromosomes and photograph them under the light microscope.
4
Cut out the photographs or use a computer to pair homologous chromosomes.
5
Arrange the pairs by decreasing size, shape and banding pattern.

Section 7 of 13Human chromosome 2 and testable hypotheses

Hypothesis
  • Hypothesis chromosomes 12 and 13 of a common ancestor fused to form human chromosome 2
  • Losing a whole pair would be harmful, so fusion is more likely.
Supporting evidence
  • The combined length of chimp 12 and 13 matches human chromosome 2.
  • The banding matches, and the chimp 12 centromere position matches.
  • Satellite DNA marks the position of a lost second centromere.
  • Telomeric DNA sits in the middle of the chromosome.
Evidence against
  • The lengths overlap slightly rather than matching perfectly.
  • The centromere position of chimp 13 does not match.
Wording
  • Wording say humans and chimps share a common ancestor and never that humans came from chimps
Testable hypothesis
Testable hypothesis a statement that can be accepted or rejected using available evidence
  • It is not testable if there is no evidence, such as the ancestor liking singing.
  • Avoid vague words such as may or could, and do not phrase it as a prediction or a causal conclusion.

Section 8 of 13Genomes and sequence similarity

1Genome
Genome all of the genetic information of an organism
  • It includes coding and non-coding DNA, mitochondrial and chloroplast DNA, and plasmids in prokaryotes.
2Similarity
  • Similarity humans share about 99.9% of their DNA with each other and about 99% with chimpanzees
  • Closely related individuals have more similar genomes.
3SNP
SNP a single nucleotide polymorphism, a one-base difference arising by mutation
  • Most SNPs do not change the protein.
  • They are used to trace ancestry and disease risk.
4Databases
  • GenBank and NCBI hold DNA, RNA and protein sequences that can be compared between species

Section 9 of 13Genome size

OrganismTypeGenome (million base pairs)Comment
T2 phageVirus of E. coli0.17Tiny viral genome
E. coliBacterium5Prokaryotes are small
Fruit flyInsect140Compact animal genome
HumanMammalAbout 3100Smaller than hagfish (4200)
Common wheatPolyploid cropAbout 17 000Wild einkorn only about 5000
Paris japonicaFlowering plantAbout 150 000Among the largest known
C-value
C-value the haploid nuclear DNA content, in picograms or megabases
  • 1 pg = 10-12 g, which is about 978 Mb, and 1 Mb = 106 bases.
Size and complexity
  • Size and complexity they are not linked
  • The genome includes non-coding DNA.
  • Polyploidy inflates plant genomes.
  • Our view of complexity may be wrong.

Section 10 of 13Uses of genome sequencing

Methods
  • Methods automated next-generation sequencing, becoming faster and cheaper each year
Phylogenetics
  • Phylogenetics classifying species by evolutionary origin
  • More similar DNA, mRNA or amino acid sequences mean a more recent common ancestor.
  • Cytochrome c is often compared, and using several genes improves accuracy.
  • Ancient DNA lets extinct species join phylogenetic trees.
Personalised medicine
  • Human Genome Project data are used to design drugs that target specific proteins
  • Targeted drugs can cause fewer side effects.
  • Screening can find risk mutations, such as for breast cancer, allowing preventive surgery or lifestyle change.
  • A genotype can predict how well a person responds to treatment.
Identification tools
  • A dichotomous key uses yes or no choices about observable features.
  • DNA barcoding compares a short gene sequence with a database.
  • eDNA from water or soil detects rare or hidden species.

Section 11 of 13More from the specification

More from the specification
Biological species concept
  • Organisms belonging to the same species can interbreed to produce fertile, viable offspring in nature.
Evolutionary relationships and cladistics
  • Systematic biological classification groups organisms according to shared derived characteristics and common ancestry deduced from genome sequences.
Genome size variation
  • Total amount of DNA measured in base pairs varies vastly across taxa without correlating directly to organismal complexity or chromosome count.
Surface area to volume ratio
  • Morphological size constraints dictate metabolic exchange rates, influencing multicellular adaptation.
Classification
  • Grouping organisms by shared features and relationships.

Section 12 of 13Key terms

TermMeaning
VariationDifferences in characteristics between individuals caused by genes, environment or both.
Biological species conceptA species is a group of organisms that can interbreed to produce fertile offspring.
Binomial nomenclatureThe two-part Latin naming system of genus plus species devised by Linnaeus.
KaryogramAn image of an individual's chromosomes arranged in pairs by size, shape and banding.
GenomeAll the genetic information of an organism.
SNPA single nucleotide polymorphism, a one-base difference in DNA between individuals.
C-valueThe haploid nuclear DNA content of an organism.
DNA barcodingIdentifying a species from a short standard DNA sequence.

Section 13 of 13Exam technique

1
Saying morphology is enough to define a species — lookalike species may be distantly related
2
Saying humans evolved from chimpanzees — they share a common ancestor
3
Giving the haploid number as the diploid number — the diploid number is twice the haploid number and always even
4
Thinking a bigger genome means a more complex organism — genome size does not match complexity

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